SNP Profiles of UF 676 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
1._UF_676	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
2._UF_676	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
3._UF_676	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
4._UF_676	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
5._UF_676	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
6._RUQ_56	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
7._UF_676	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
8._RUQ_56	_	_	AC	_	CT	AG	AC	CG	AG	_	_	AG	AT	CG
9._GC-08-080-2-03	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
10._GC-08-080-2-03	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
11._GC-08-080-2-03	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
12._GC-08-080-2-03	CT	AC	AC	GT	CT	AG	AC	CG	AG	CT	AG	AG	AT	CG
13._UF_676	_	_	AC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
14._RUQ_56	_	_	AC	_	_	_	_	_	AG	_	AG	_	_	_
15._RUQ_56	AG	AC	AC	AC	AG	AG	AC	CG	AG	AG	AG	AG	AT	CG
16._MITC-000064	AG	AC	AC	AC	AG	AG	AC	CG	AG	AG	AG	AG	AT	CG
17._UF_676_Fld#_180_Plt#_2	AG	AC	AC	AC	AG	AG	AC	CG	AG	AG	AG	AG	AT	CG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	CC	CT	GT	CC	AA	CC	CT	CT	GT	AG	GT	AC	CG
1._UF_676	AG	CC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	CG
2._UF_676	AG	CC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	CG
3._UF_676	AG	CC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	CG
4._UF_676	AG	CC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	CG
5._UF_676	AG	CC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	CG
6._RUQ_56	AG	CC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	CG
7._UF_676	AG	CC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	CG
8._RUQ_56	_	_	_	_	CC	AC	CC	_	_	_	_	_	_	CG
9._GC-08-080-2-03	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	AC	CG
10._GC-08-080-2-03	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	AC	CG
11._GC-08-080-2-03	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	AC	CG
12._GC-08-080-2-03	AG	CC	CT	GT	CC	AC	CC	CT	CT	GT	AG	GT	AC	CG
13._UF_676	AG	CC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	CG
14._RUQ_56	_	AC	_	_	CC	AC	CC	_	CT	GT	AG	_	AC	CG
15._RUQ_56	_	CC	_	AC	CC	AC	GG	AG	_	AC	AG	AC	AC	CG
16._MITC-000064	_	CC	_	AC	CC	AC	GG	AG	_	AC	AG	AC	AC	CG
17._UF_676_Fld#_180_Plt#_2	_	CC	_	AC	CC	AC	GG	AG	_	AC	AG	AC	AC	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CG	CC	AG	CC	CT	GT	AG	AT	GT	CT	CT	CT	CG	AG
1._UF_676	_	CC	AG	_	CT	_	_	_	GT	_	_	CT	CG	AG
2._UF_676	_	CC	AG	_	CT	_	_	_	GT	_	_	CT	CG	AG
3._UF_676	_	CC	AG	_	CT	_	_	_	GT	_	_	CT	CG	AG
4._UF_676	_	CC	AG	_	CT	_	_	_	GT	_	_	CT	CG	AG
5._UF_676	_	CC	AG	_	CT	_	_	_	GT	_	_	CT	CG	AG
6._RUQ_56	_	CC	AG	_	CT	_	_	_	GT	_	_	CT	CG	AG
7._UF_676	_	CC	AG	_	CT	_	_	_	GT	_	_	CT	CG	AG
8._RUQ_56	CG	CC	_	_	CT	_	AG	AT	_	_	CT	_	CG	_
9._GC-08-080-2-03	CG	CC	AG	CT	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG
10._GC-08-080-2-03	CG	CC	AG	CT	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG
11._GC-08-080-2-03	CG	CC	AG	CT	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG
12._GC-08-080-2-03	CG	CC	AG	CT	CT	GT	AG	AT	GT	TT	CT	CT	CG	AG
13._UF_676	_	CC	AG	_	CT	_	_	_	GT	_	_	CT	GG	AG
14._RUQ_56	_	_	AG	CT	_	_	_	_	GT	_	_	_	CG	_
15._RUQ_56	_	GG	AG	_	AG	AC	AG	_	AA	AG	AG	AG	CG	AG
16._MITC-000064	_	GG	AG	_	AG	AC	AG	_	AA	AG	AG	AG	CG	AG
17._UF_676_Fld#_180_Plt#_2	_	GG	AG	_	AG	AC	AG	_	AA	AG	AG	AG	CG	AG

Input profile: UF_676 RUQ_56

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._UF_676

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8203 7 > FP

Dapeng Zhang, 2016

2._UF_676

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8203 5 > FP

Dapeng Zhang, 2016

3._UF_676

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8203 4 > FP

Dapeng Zhang, 2016

4._UF_676

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8203 3 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._UF_676

97.9 %
24 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

6._UF_676 RUQ_56

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._UF_676

97.9 %
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0245

Dapeng Zhang, 2016

8._UF_676 RUQ_56

97.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

9._UF_676 GC-08-080-2-03

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

10._UF_676 GC-08-080-2-03

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

11._UF_676 GC-08-080-2-03

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

12._UF_676 GC-08-080-2-03

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

13._UF_676

95.8 %
24 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia

Location: KW 293 I-043

Dapeng Zhang, 2016

14._UF_676 RUQ_56

90.6 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

15._UF_676 RUQ_56

54.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

16._UF_676 MITC-000064

54.2 %
36 shared markers

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USDA-SHRS, United States of America

17._UF_676 UF_676_Fld#_180_Plt#_2

54.2 %
36 shared markers

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USDA-TARS, United States of America

Location: Field: 180, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484